Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs202245291 chr11:51271599 C/T 0 173 15.57 15.33 0.4 KM Plot
PAAD rs2043291 chr19:33457713 G/A 1.54E-9 174 15.57 13.58 2.2 KM Plot
PAAD rs2057523 chr13:28073816 T/C 6.91E-7 174 15.2 17 3.5 KM Plot
PAAD rs2058090 chr17:12873484 G/T 0.000106 175 16.13 11.13 7.97 KM Plot
PAAD rs2064719 chr6:161599733 C/T 0 178 15.62 13.07 1.03 KM Plot
PAAD rs2069884 chr5:135228388 G/T 3.64E-5 178 15.48 16.6 5.33 KM Plot
PAAD rs2069885 chr5:135228165 G/A 6.26E-7 176 15.43 17.23 3.18 KM Plot
PAAD rs2105672 chr11:125586278 C/G 0.000108 178 16.08 14.37 5.03 KM Plot
PAAD rs2107853 chr7:6174038 A/G 0 176 15.4 15.5 1.03 KM Plot
PAAD rs2109220 chr17:38930197 A/G 2.71E-12 171 15.37 15.72 1.37 KM Plot
PAAD rs2131093 chr19:49350693 A/T 1.44E-12 173 16.2 12.6 1.37 KM Plot
PAAD rs2140732 chr3:39066385 A/G 0.000149 178 15.27 16.37 7.47 KM Plot
PAAD rs214134 chr5:88253916 G/A 4.71E-5 176 7.97 15.4 16.93 KM Plot
PAAD rs214136 chr5:88252473 A/G 4.71E-5 176 7.97 15.4 16.93 KM Plot
PAAD rs216294 chr12:6153750 A/G 1.17E-12 176 1.37 14.73 15.57 KM Plot